SMTL ID : 3mp5.1 (2 other biounits)

Crystal Structure of Human Lyase R41M in complex with HMG-CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

1 x HMG: 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A(Non-covalent)

HMG.1: 21 residues within 4Å: Chain B: D.15, Q.18, S.51, K.53, W.54, V.55, H.61, N.82, F.100, N.111, I.112, N.113, R.122, Y.140, S.142, G.176, T.178, H.206, H.208, C.239 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.55, B:Y.140, B:Y.140 Hydrogen bonds: B:D.15, B:Q.18, B:F.49, B:S.51, B:S.51, B:N.113, B:H.208 Salt bridges: B:K.53, B:H.206

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain B: D.15, H.206, H.208, N.248 Ligands: HMG.1 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.15, B:H.206, B:H.208, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, Z. et al., Functional insights into human HMG-CoA lyase from structures of Acyl-CoA-containing ternary complexes. J.Biol.Chem. (2010)

Release Date

2010-06-16

Peptides

Hydroxymethylglutaryl-CoA lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydroxymethylglutaryl-CoA lyase

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