SMTL ID : 3mqk.1

Cbf5-Nop10-Gar1 complex binding with 17mer RNA containing ACA trinucleotide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x C- G- A- U- C- C- A- C- A: RNA (5'-R(P*CP*GP*AP*UP*CP*CP*AP*CP*A)-3')(Non-covalent)

C-G-A-U-C-C-A-C-A.1: 18 residues within 4Å: Chain A: K.67, T.257, H.258, G.259, V.313, E.314, K.315, V.316 Chain D: G.1, U.2, U.3, C.4, G.5, A.6, U.7, C.8, C.9, A.10 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.251, A:S.251, A:H.258, A:H.258, A:A.260, A:D.261, A:A.263, A:E.328 Salt bridges: A:K.325 pi-Stacking: A:W.327, A:W.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J. et al., Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide. Rna (2011)

Release Date

2010-12-29

Peptides

tRNA pseudouridine synthase B: A
Ribosome biogenesis protein Nop10: B
Small nucleolar rnp gar1-like protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

tRNA pseudouridine synthase B

Ribosome biogenesis protein Nop10

Small nucleolar rnp gar1-like protein