SMTL ID : 3mql.1

Crystal structure of the fibronectin 6FnI1-2FnII7FnI fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: L.121, N.124, N.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.126, A:Q.146

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 7 residues within 4Å: Chain A: Y.122, E.133, G.134, R.135, W.141, Y.148, F.154 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.122, A:W.141, A:Y.148, A:F.154 Hydrogen bonds: A:G.134

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 6 residues within 4Å: Chain A: Y.62, G.74, R.75, W.81, Y.88, Y.94 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.62, A:W.81, A:W.81, A:Y.88 MRD.4: 7 residues within 4Å: Chain A: F.67, S.69, C.70, T.71, T.72, E.73, H.100 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.73 Hydrogen bonds: A:T.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erat, M.C. et al., Implications for collagen binding from the crystallographic structure of fibronectin 6FnI1-2FnII7FnI. J.Biol.Chem. (2010)

Release Date

2010-08-25

Peptides

Fibronectin 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibronectin 1