SMTL ID : 3ms6.1

Crystal structure of Hepatitis B X-Interacting Protein (HBXIP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: L.5, H.8, T.12, H.79, D.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.8, A:T.12, A:H.79 PEG.5: 5 residues within 4Å: Chain B: L.5, H.8, T.12, H.79, D.80 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.12, B:T.12, B:H.79, B:D.80

4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 6 residues within 4Å: Chain A: E.68, S.69, D.70 Chain B: D.61, I.62, V.64 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.64 IPA.3: 7 residues within 4Å: Chain A: T.36, H.41, N.71, I.74, H.87 Chain B: L.55 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.74 Hydrogen bonds: A:N.71 IPA.6: 6 residues within 4Å: Chain A: D.61, I.62, V.64 Chain B: E.68, S.69, D.70 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.64 IPA.7: 7 residues within 4Å: Chain A: L.55 Chain B: T.36, H.41, N.71, I.74, H.87 Ligands: GOL.8 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.74 Hydrogen bonds: B:N.71

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: T.36, N.71, H.87, M.89 Ligands: IPA.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.71 GOL.8: 5 residues within 4Å: Chain B: T.36, N.71, H.87, M.89 Ligands: IPA.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Saez, I. et al., Structural Characterization of HBXIP: The Protein That Interacts with the Anti-Apoptotic Protein Survivin and the Oncogenic Viral Protein HBx. J.Mol.Biol. (2011)

Release Date

2010-11-10

Peptides

Hepatitis B virus X-interacting protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hepatitis B virus X-interacting protein

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