SMTL ID : 3mtg.1

Crystal structure of human S-adenosyl homocysteine hydrolase-like 1 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 24 residues within 4Å: Chain A: V.170, C.206, G.232, G.234, E.235, V.236, T.254, E.255, I.256, D.257, C.260, C.287, T.288, G.289, N.290, V.293, M.311, G.312, H.313, L.356, N.358 Chain B: Q.425, K.438, Y.442 14 PLIP interactions: 10 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:V.236, A:L.356 Hydrogen bonds: A:E.235, A:E.235, A:V.236, A:T.254, A:I.256, A:D.257, A:N.290, A:M.311, B:Q.425, B:K.438, B:K.438, B:Y.442 NAD.2: 23 residues within 4Å: Chain A: Q.425, K.438, Y.442 Chain B: V.170, C.206, G.232, G.234, E.235, V.236, T.254, E.255, I.256, D.257, C.260, C.287, T.288, G.289, N.290, V.293, M.311, G.312, H.313, L.356 14 PLIP interactions: 5 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:K.438, A:K.438, A:Y.442, A:Y.442, B:E.235, B:E.235, B:V.236, B:I.256, B:D.257, B:N.290, B:M.311 Salt bridges: A:K.438 Hydrophobic interactions: B:V.236, B:L.356 NAD.3: 24 residues within 4Å: Chain C: V.170, C.206, G.232, G.234, E.235, V.236, T.254, E.255, I.256, D.257, C.260, C.287, T.288, G.289, N.290, V.293, M.311, G.312, H.313, L.356, N.358 Chain D: Q.425, K.438, Y.442 13 PLIP interactions: 8 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:V.236, C:L.356 Hydrogen bonds: C:E.235, C:V.236, C:I.256, C:D.257, C:N.290, C:M.311, D:Q.425, D:K.438, D:K.438, D:Y.442, D:Y.442 NAD.4: 23 residues within 4Å: Chain C: Q.425, K.438, Y.442 Chain D: V.170, C.206, G.232, G.234, E.235, V.236, T.254, E.255, I.256, D.257, C.260, C.287, T.288, G.289, N.290, V.293, M.311, G.312, H.313, L.356 13 PLIP interactions: 4 interactions with chain C, 9 interactions with chain D Hydrogen bonds: C:K.438, C:K.438, C:Y.442, D:E.235, D:V.236, D:T.254, D:I.256, D:D.257, D:N.290, D:M.311 Salt bridges: C:K.438 Hydrophobic interactions: D:V.236, D:L.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wisniewska, M. et al., Crystal structure of human S-adenosyl homocysteine hydrolase-like 1 protein. TO BE PUBLISHED

Release Date

2010-05-26

Peptides

Putative adenosylhomocysteinase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Putative adenosylhomocysteinase 2