SMTL ID : 3mtx.1 (1 other biounit)

Crystal structure of chicken MD-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PGT.1: 21 residues within 4Å: Chain A: V.40, F.45, A.49, M.51, A.62, Y.76, L.80, K.87, L.88, L.99, Y.101, P.104, I.105, T.106, Y.117, I.119, A.121, A.132, A.134, F.136, V.138 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.40, A:F.45, A:A.49, A:A.62, A:L.88, A:L.99, A:Y.101, A:I.105, A:I.119, A:A.121, A:A.132, A:F.136, A:F.136, A:F.136, A:V.138 Hydrogen bonds: A:K.87, A:T.106, A:T.106

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 4 residues within 4Å: Chain A: T.72, S.75, Y.76, S.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.75, A:Y.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoon, S.I. et al., Crystal structure of soluble MD-1 and its interaction with lipid IVa. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-09

Peptides

Protein MD-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein MD-1

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