SMTL ID : 3muu.1 (1 other biounit)

Crystal structure of the Sindbis virus E2-E1 heterodimer at low pH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

homo-trimer

Ligands

5 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 3 residues within 4Å: Chain A: H.282, S.284, N.318 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.3: 4 residues within 4Å: Chain A: K.556 Chain B: H.282, S.284, N.318 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.4: 2 residues within 4Å: Chain B: K.131, N.605 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.5: 3 residues within 4Å: Chain C: H.282, S.284, N.318 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.6: 5 residues within 4Å: Chain A: K.139, L.292 Chain C: K.131, N.605 Ligands: NAG-NAG-BMA-MAN-MAN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.139

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 3 residues within 4Å: Chain A: N.605 Ligands: NAG-NAG-BMA-MAN.6, NAG-NAG-BMA-MAN.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Structural changes of envelope proteins during alphavirus fusion. Nature (2010)

Release Date

2010-11-24

Peptides

Structural polyprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Structural polyprotein

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