SMTL ID : 3mvs.1

Structure of the N-terminus of Cadherin 23

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.21, D.71, E.73, D.104 Ligands: CA.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.21, A:D.71, A:E.73, A:D.104, H2O.4, H2O.7 CA.2: 8 residues within 4Å: Chain A: E.21, E.73, D.101, V.102, D.104, N.105, D.137 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.73, A:D.101, A:V.102, A:D.104, A:D.137 CA.3: 6 residues within 4Å: Chain A: N.103, N.105, D.135, D.137, G.141, D.186 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.105, A:D.135, A:D.137, A:G.141, A:D.186 CA.4: 5 residues within 4Å: Chain A: E.120, E.173, D.205, M.206, D.208 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.173, A:E.173, A:D.205, A:D.208, H2O.10 CA.5: 4 residues within 4Å: Chain A: E.120, D.171, E.173, D.208 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.120, A:D.171, A:D.208, H2O.4, H2O.10 CA.6: 6 residues within 4Å: Chain A: N.3, R.4, D.36, D.38, D.40, D.86 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.4, A:D.36, A:D.36, A:D.38, A:D.40

22 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: N.3, D.38, D.40, Q.88 Ligand excluded by PLIP EDO.8: 1 residues within 4Å: Chain A: N.39 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: K.75, S.76, E.77 Ligand excluded by PLIP EDO.10: 1 residues within 4Å: Chain A: P.127 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: T.9, N.10, D.14 Ligands: EDO.18 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: E.21, D.22, T.23, P.24, P.69 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain A: E.58, T.61 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain A: H.110, N.111, Y.114, F.129, I.130, N.132 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: I.130, V.131, N.132, Y.146, A.160, R.161 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain A: F.12, V.29, T.30 Ligand excluded by PLIP EDO.17: 2 residues within 4Å: Chain A: N.3, L.5 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain A: F.7, F.8, I.91, R.93 Ligands: EDO.11 Ligand excluded by PLIP EDO.19: 1 residues within 4Å: Chain A: Q.168 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain A: A.106, P.107, T.108, T.195 Ligand excluded by PLIP EDO.21: 1 residues within 4Å: Chain A: N.111 Ligand excluded by PLIP EDO.22: 2 residues within 4Å: Chain A: Y.178 Ligands: EDO.25 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain A: V.46, S.47, G.48, E.49 Ligand excluded by PLIP EDO.24: 2 residues within 4Å: Chain A: R.4, M.37 Ligand excluded by PLIP EDO.25: 4 residues within 4Å: Chain A: V.174, T.175 Ligands: EDO.22, EDO.28 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain A: D.205, M.206, Q.207 Ligands: EDO.27 Ligand excluded by PLIP EDO.27: 2 residues within 4Å: Chain A: D.205 Ligands: EDO.26 Ligand excluded by PLIP EDO.28: 3 residues within 4Å: Chain A: V.174, Q.176 Ligands: EDO.25 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elledge, H.M. et al., Structure of the N terminus of cadherin 23 reveals a new adhesion mechanism for a subset of cadherin superfamily members. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-09

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-23