SMTL ID : 3mw8.1

Crystal structure of an UROPORPHYRINOGEN-III SYNTHASE (Sama_3255) from SHEWANELLA AMAZONENSIS SB2B at 1.65 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: S.180, G.181, E.182, V.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.181, A:E.182 EDO.2: 5 residues within 4Å: Chain A: T.224, N.225, A.226, D.236, A.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.225 Water bridges: A:D.236, A:D.236 EDO.3: 3 residues within 4Å: Chain A: R.140, G.143, A.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.144 EDO.4: 4 residues within 4Å: Chain A: D.174, W.198, D.201, C.202 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.198 Water bridges: A:D.201 EDO.5: 5 residues within 4Å: Chain A: Q.44, K.129, Y.148, L.149, E.150 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.44, A:K.129, A:E.150, A:E.150, A:E.150 EDO.6: 5 residues within 4Å: Chain A: E.116, Q.117, V.118, S.119, R.142 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.116, A:V.118, A:S.119 Water bridges: A:R.142 EDO.7: 4 residues within 4Å: Chain A: A.76, I.94, T.95 Ligands: EDO.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.76, A:T.95 EDO.8: 2 residues within 4Å: Chain A: R.167, F.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.167, A:R.167 EDO.9: 6 residues within 4Å: Chain A: L.45, L.48, L.69, Q.72, W.73, P.74 No protein-ligand interaction detected (PLIP) EDO.10: 5 residues within 4Å: Chain A: W.73, P.74, K.75, A.76 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.76 EDO.11: 6 residues within 4Å: Chain A: R.127, K.129, G.130, G.131, Y.148, E.150 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.127, A:G.130, A:G.131, A:E.150 Water bridges: A:K.129, A:K.129 EDO.12: 6 residues within 4Å: Chain A: Q.44, E.47, V.124, S.147, Y.148, L.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.44, A:S.147, A:Y.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an UROPORPHYRINOGEN-III SYNTHASE (Sama_3255) from SHEWANELLA AMAZONENSIS SB2B at 1.65 A resolution. To be published

Release Date

2010-05-19

Peptides

Uroporphyrinogen-III synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uroporphyrinogen-III synthase