SMTL ID : 3mwa.1

Crystal structure of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase covalently modified by 2-prime-fluoro-6-iodo-UMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x UFT: 2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate)(Covalent)

UFT.1: 17 residues within 4Å: Chain A: D.42, K.121, N.123, D.155, K.157, T.213, T.214, P.283, I.285, Q.288, N.310, I.311, G.312, R.313 Chain B: D.160, I.161, T.164 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:D.42, A:K.121, A:N.123, A:T.214, A:T.214, A:T.214, A:I.285, A:Q.288, A:N.310, A:G.312, A:R.313 Water bridges: A:N.123, A:G.284, A:G.284, A:G.284, A:A.287 Salt bridges: A:R.313 UFT.3: 18 residues within 4Å: Chain A: D.160, I.161, T.164 Chain B: D.42, K.121, N.123, D.155, K.157, T.213, T.214, P.283, I.285, A.287, Q.288, N.310, I.311, G.312, R.313 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:K.121, B:N.123, B:D.155, B:T.214, B:T.214, B:I.285, B:Q.288, B:N.310, B:G.312, B:R.313 Water bridges: B:D.42, B:N.123, B:G.284, B:A.287, B:A.287, B:A.287 Salt bridges: B:R.313

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: N.318, P.319 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.318

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain B: K.166, R.169, Y.197, D.198, E.199, E.200 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.198, B:D.198, B:E.199, B:E.200 Salt bridges: B:K.166, B:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal structure of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase covalently modified by 2-prime-fluoro-6-iodo-UMP. To be Published

Release Date

2011-04-06

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

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