SMTL ID : 3mxb.1 (1 other biounit)

Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.21 Chain B: S.20 Chain C: A.13, C.14 Chain D: C.15 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:S.20, A:D.21, A:D.21, H2O.2, H2O.3 CA.2: 4 residues within 4Å: Chain A: G.20 Chain B: D.21 Chain C: C.15 Chain D: C.14 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:D.21, B:D.21, A:G.20, H2O.1, H2O.3

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 7 residues within 4Å: Chain A: K.97 Chain B: F.10, Y.13, F.55, K.58, L.59, E.62 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.62 Salt bridges: B:K.58, A:K.97 PO4.4: 7 residues within 4Å: Chain A: R.52 Chain B: L.98, K.99, Q.102, N.137, D.138 Chain D: T.16 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.102, B:L.136, B:N.137 Water bridges: B:S.20, A:R.52 Salt bridges: B:K.99, A:R.52 PO4.5: 7 residues within 4Å: Chain B: Q.39, L.40, S.41, L.42, S.80 Chain C: G.3, T.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.39, B:L.40, B:L.40, B:L.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munoz, I.G. et al., Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus. Nucleic Acids Res. (2011)

Release Date

2010-10-06

Peptides

V3(E8K): A
V2(K7E-G19S): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

V3(E8K)

V2(K7E-G19S)

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