SMTL ID : 3myz.1 (1 other biounit)

Protein induced photophysical changes to the amyloid indicator dye, thioflavin T

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 1 residues within 4Å: Chain A: H.52 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.52

2 x TFX: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium(Non-covalent)

TFX.2: 4 residues within 4Å: Chain A: Q.9, Y.11, Y.27, S.29 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.9, A:Y.27 pi-Stacking: A:Y.11, A:Y.27 TFX.3: 6 residues within 4Å: Chain A: N.43, G.44, K.76, D.77, E.78 Ligands: ACT.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.76

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.4: 3 residues within 4Å: Chain A: Y.11, R.13, N.25 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.25, A:N.25 Water bridges: A:R.13

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 4 residues within 4Å: Chain A: E.78, I.93, K.95 Ligands: TFX.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.78 Salt bridges: A:K.95 ACT.6: 3 residues within 4Å: Chain A: E.37, N.84, H.85 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolfe, L.S. et al., Protein-induced photophysical changes to the amyloid indicator dye thioflavin T. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-09-08

Peptides

Beta-2-microglobulin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-2-microglobulin

Related Entries With Identical Sequence