SMTL ID : 3mzo.2 (2 other biounits)

Crystal structure of a HD-domain phosphohydrolase (lin2634) from LISTERIA INNOCUA at 1.98 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: R.19, H.34, H.68, D.69, K.79, D.138 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.34, A:H.68, A:D.69, A:D.138, H2O.5 CA.2: 3 residues within 4Å: Chain A: Y.18 Chain B: Y.18 Ligands: CA.9 No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain A: H.68, D.69 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.69, H2O.4, H2O.4, H2O.5, H2O.6 CA.4: 1 residues within 4Å: Chain A: D.51 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.51, H2O.5 CA.5: 1 residues within 4Å: Chain A: D.126 No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Chain A: E.185 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.185, H2O.2, H2O.4, H2O.5, H2O.6 CA.8: 6 residues within 4Å: Chain B: R.19, H.34, H.68, D.69, K.79, D.138 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.34, B:H.68, B:D.69, B:D.138, H2O.11 CA.9: 3 residues within 4Å: Chain A: Y.18 Chain B: Y.18 Ligands: CA.2 No protein-ligand interaction detected (PLIP) CA.10: 2 residues within 4Å: Chain B: H.68, D.69 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.69, H2O.10, H2O.10, H2O.11, H2O.12 CA.11: 1 residues within 4Å: Chain B: D.51 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.51, H2O.11 CA.12: 1 residues within 4Å: Chain B: D.126 No protein-ligand interaction detected (PLIP) CA.13: 1 residues within 4Å: Chain B: E.185 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.185, H2O.8, H2O.10, H2O.11, H2O.12

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain A: I.75, G.76, D.77, I.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.76 PEG.14: 4 residues within 4Å: Chain B: I.75, G.76, D.77, I.78 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a HD-domain phosphohydrolase (lin2634) from LISTERIA INNOCUA at 1.98 A resolution. To be published

Release Date

2010-05-26

Peptides

Lin2634 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lin2634 protein

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