SMTL ID : 3n1d.1

Crystal structure of the complex of type I ribosome inactivating protein with ribose at 1.7A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: T.226, N.227, T.229, S.230 No protein-ligand interaction detected (PLIP)

1 x RIP: beta-D-ribopyranose(Non-covalent)

RIP.2: 8 residues within 4Å: Chain A: Y.70, G.109, N.110, Y.111, I.155, E.160, R.163 Ligands: PEG.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.111, A:R.163, A:R.163 Water bridges: A:Y.70, A:N.110, A:E.112

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175, Y.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8 Water bridges: A:A.9, A:A.9

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 10 residues within 4Å: Chain A: V.69, Y.70, I.71, M.72, F.83, E.85, G.109, I.155, A.159 Ligands: RIP.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.69, A:I.71, A:E.85, A:G.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, N. et al., Crystal structure of the complex of type I ribosome inactivating protein with ribose at 1.7A resolution. To be Published

Release Date

2010-06-23

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein