SMTL ID : 3n1s.1 (3 other biounits)

Crystal structure of wild type ecHint GMP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 16 residues within 4Å: Chain A: I.6, F.7, I.10, F.29, R.30, D.31, I.32, S.33, L.41, N.88, G.94, Q.95, E.96, V.97, H.101, H.103 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.30, A:I.32, A:S.33, A:N.88, A:E.96, A:V.97 Water bridges: A:D.31, A:S.33, A:N.88, A:N.88 Salt bridges: A:H.101, A:H.103 pi-Stacking: A:F.7 5GP.5: 17 residues within 4Å: Chain B: I.6, F.7, F.29, R.30, D.31, I.32, S.33, L.41, N.88, G.94, Q.95, E.96, V.97, H.101, H.103 Ligands: EDO.3, EDO.6 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:R.30, B:I.32, B:S.33, B:N.88, B:E.96, B:V.97 Water bridges: B:D.31, B:S.33, B:S.33, B:N.88, B:N.88, B:E.96 Salt bridges: B:H.101, B:H.103 pi-Stacking: B:F.7

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: P.109, L.110, G.111 Chain B: R.91, H.92, G.94 Ligands: EDO.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.111, A:G.111 EDO.3: 5 residues within 4Å: Chain A: M.113 Chain B: Q.35, N.88 Ligands: 5GP.5, EDO.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.35, B:Q.35, B:E.96 EDO.4: 2 residues within 4Å: Chain A: I.32, P.34 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain B: I.10, S.17, D.18, F.29 Ligands: 5GP.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.18, B:D.18 EDO.7: 7 residues within 4Å: Chain B: R.30, P.34, A.36, P.37, T.38, H.39, I.40 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.39, B:H.39 Water bridges: B:A.36 EDO.8: 6 residues within 4Å: Chain A: R.91, H.92, G.94 Chain B: P.109, L.110, G.111 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.111 Water bridges: B:R.84, B:G.111 EDO.9: 5 residues within 4Å: Chain B: I.11, Q.22, D.23, D.24, N.45 3 PLIP interactions: 3 interactions with chain B Water bridges: B:D.23, B:D.24, B:D.24 EDO.10: 6 residues within 4Å: Chain B: A.73, E.74, G.77, I.78, A.79, E.80 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.74, B:G.77, B:A.79, B:E.80 Water bridges: B:E.80, B:E.80 EDO.11: 9 residues within 4Å: Chain A: R.84, G.111, P.112, M.113 Chain B: N.88, G.93, G.94 Ligands: EDO.2, EDO.3 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.84, B:G.93 Water bridges: A:M.113, B:Q.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bardaweel, S. et al., Probing the Impact of the echinT C-Terminal Domain on Structure and Catalysis. J.Mol.Biol. (2010)

Release Date

2010-10-20

Peptides

HIT-like protein hinT: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIT-like protein hinT

Related Entries With Identical Sequence