- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.81 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
- 8 x LWY: 1-[(R)-hydroxy(methyl)phosphoryl]-L-proline(Non-covalent)
LWY.3: 17 residues within 4Å:- Chain A: H.65, H.67, L.75, H.142, K.190, G.196, V.197, A.198, H.231, Y.233, H.251, T.276, Y.277, D.323, L.325
- Ligands: ZN.1, ZN.2
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:Y.277
- Hydrogen bonds: A:V.197, A:A.198, A:Y.233
- Salt bridges: A:H.142, A:H.231, A:H.251, A:D.323
LWY.6: 17 residues within 4Å:- Chain B: H.65, H.67, L.75, H.142, I.164, K.190, G.196, V.197, A.198, H.231, Y.233, H.251, T.276, Y.277, D.323
- Ligands: ZN.4, ZN.5
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:T.276, B:Y.277
- Hydrogen bonds: B:V.197, B:A.198, B:Y.233
- Salt bridges: B:H.142, B:H.231, B:D.323
LWY.9: 16 residues within 4Å:- Chain C: H.65, H.67, L.75, H.142, K.190, G.196, V.197, A.198, H.231, Y.233, H.251, L.280, D.323, L.325
- Ligands: ZN.7, ZN.8
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:L.280
- Hydrogen bonds: C:V.197, C:A.198, C:Y.233, C:Y.233
- Salt bridges: C:H.142, C:H.231, C:H.251, C:D.323
LWY.12: 18 residues within 4Å:- Chain D: H.65, H.67, L.75, H.142, I.164, K.190, G.196, V.197, A.198, H.231, Y.233, H.251, Y.277, L.280, D.323, L.325
- Ligands: ZN.10, ZN.11
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:Y.277, D:L.280
- Hydrogen bonds: D:V.197, D:A.198, D:Y.233
- Salt bridges: D:H.142, D:H.231, D:D.323
LWY.15: 17 residues within 4Å:- Chain E: H.65, H.67, L.75, H.142, K.190, G.196, V.197, A.198, H.231, Y.233, H.251, T.276, Y.277, D.323, L.325
- Ligands: ZN.13, ZN.14
9 PLIP interactions:9 interactions with chain E- Hydrophobic interactions: E:T.276, E:Y.277
- Hydrogen bonds: E:V.197, E:A.198, E:Y.233, E:Y.233
- Salt bridges: E:H.142, E:H.231, E:D.323
LWY.18: 15 residues within 4Å:- Chain F: H.65, H.67, L.75, H.142, K.190, G.196, V.197, A.198, H.231, Y.233, H.251, D.323, L.325
- Ligands: ZN.16, ZN.17
7 PLIP interactions:7 interactions with chain F- Hydrogen bonds: F:V.197, F:A.198, F:Y.233, F:Y.233
- Salt bridges: F:H.142, F:H.231, F:D.323
LWY.21: 16 residues within 4Å:- Chain G: H.65, H.67, L.75, H.142, K.190, G.196, V.197, A.198, H.231, Y.233, H.251, Y.277, D.323, L.325
- Ligands: ZN.19, ZN.20
8 PLIP interactions:8 interactions with chain G- Hydrophobic interactions: G:Y.277
- Hydrogen bonds: G:V.197, G:A.198, G:Y.233, G:Y.233
- Salt bridges: G:H.142, G:H.231, G:D.323
LWY.24: 16 residues within 4Å:- Chain H: H.65, H.67, L.75, H.142, K.190, G.196, V.197, A.198, H.231, Y.233, H.251, L.280, D.323, L.325
- Ligands: ZN.22, ZN.23
8 PLIP interactions:8 interactions with chain H- Hydrophobic interactions: H:L.280, H:L.325
- Hydrogen bonds: H:V.197, H:A.198, H:Y.233
- Salt bridges: H:H.142, H:H.231, H:D.323
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiang, D.F. et al., Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily . Biochemistry (2010)
- Release Date
- 2010-06-02
- Peptides
- PROLIDASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.81 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
- 8 x LWY: 1-[(R)-hydroxy(methyl)phosphoryl]-L-proline(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiang, D.F. et al., Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily . Biochemistry (2010)
- Release Date
- 2010-06-02
- Peptides
- PROLIDASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H