SMTL ID : 3n2i.1

2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: G.37, A.38, G.39, K.40 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: G.37, A.38, G.39, K.40 Ligand excluded by PLIP

2 x THM: THYMIDINE(Non-covalent)

THM.2: 13 residues within 4Å: Chain A: E.36, E.64, P.65, R.75, K.79, V.96, R.100, R.122, S.126, S.127, Y.130, Q.131, I.181 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.64, A:Y.130 Hydrogen bonds: A:E.36, A:R.75, A:R.75, A:R.100, A:Q.131, A:Q.131, A:E.182, A:E.182 Water bridges: A:E.64 THM.4: 12 residues within 4Å: Chain B: E.64, P.65, R.75, V.96, R.100, R.122, S.126, S.127, Y.130, Q.131, D.179, I.181 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:E.64 Hydrogen bonds: B:R.75, B:R.100, B:Q.131, B:Q.131, B:D.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halavaty, A.S. et al., 2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine. To be Published

Release Date

2010-06-02

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

Related Entries With Identical Sequence