- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.2: 9 residues within 4Å:- Chain A: P.119, E.121, A.122, F.124, S.125, L.303, G.304
- Chain C: T.316
- Ligands: AES.12
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Water bridges: A:G.304
- Hydrogen bonds: C:T.316
EPE.11: 9 residues within 4Å:- Chain A: L.287
- Chain B: E.121, A.122, F.124, S.125, L.303, G.304
- Chain D: T.316
- Ligands: AES.3
3 PLIP interactions:3 interactions with chain B- Water bridges: B:Q.90, B:P.302, B:G.304
- 8 x AES: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE(Non-covalent)
AES.3: 13 residues within 4Å:- Chain A: T.76, G.77, T.100, E.133, S.250, L.287
- Chain B: L.84, L.92, F.124, S.125, L.128
- Ligands: SO4.9, EPE.11
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:T.76, A:S.250
- Hydrophobic interactions: B:L.128
- pi-Stacking: B:F.124
AES.4: 9 residues within 4Å:- Chain A: E.120, L.123, F.124, L.127
- Chain B: M.41, L.135, N.137, V.142, F.143
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:E.120, A:L.123, B:F.143
- Hydrogen bonds: A:E.120
AES.12: 12 residues within 4Å:- Chain A: L.84, L.92, F.124, S.125, L.128
- Chain B: T.76, G.77, E.133, S.250, L.287
- Ligands: EPE.2, SO4.16
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.287
- Hydrogen bonds: B:E.133, B:S.250
- Water bridges: B:G.289
- pi-Stacking: A:F.124
AES.13: 9 residues within 4Å:- Chain A: M.41, L.135, N.137, V.142, F.143
- Chain B: E.120, L.123, F.124, L.127
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:E.120
AES.18: 11 residues within 4Å:- Chain C: T.76, G.77, E.133, S.250, L.287
- Chain D: L.84, L.92, F.124, S.125, L.128
- Ligands: SO4.24
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:E.133, C:S.250
- pi-Stacking: D:F.124
AES.19: 9 residues within 4Å:- Chain C: E.120, L.123, F.124, L.127
- Chain D: M.41, L.135, N.137, V.142, F.143
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:F.143, C:E.120
- Hydrogen bonds: C:E.120
AES.26: 13 residues within 4Å:- Chain C: L.84, L.92, F.124, S.125, L.128
- Chain D: T.76, G.77, T.100, E.133, S.250, L.287
- Ligands: SO4.23, SO4.30
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.287
- Hydrogen bonds: D:E.133, D:S.250
- pi-Stacking: C:F.124
AES.27: 10 residues within 4Å:- Chain C: M.41, I.43, L.135, N.137, V.142, F.143
- Chain D: E.120, L.123, F.124, L.127
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:E.120, D:L.123, C:F.143
- 16 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 8 residues within 4Å:- Chain A: R.138, I.176, P.230, E.231, V.232, A.237, A.352, V.354
Ligand excluded by PLIPSO4.6: 5 residues within 4Å:- Chain A: D.112, V.115
- Chain B: I.43, F.143, H.145
Ligand excluded by PLIPSO4.7: 6 residues within 4Å:- Chain A: G.285, A.286, L.287, S.288
- Chain D: S.318, N.322
Ligand excluded by PLIPSO4.8: 5 residues within 4Å:- Chain A: I.43, F.143, H.145
- Chain B: D.112, V.115
Ligand excluded by PLIPSO4.9: 7 residues within 4Å:- Chain A: T.134, L.135, N.207, S.250, L.287, S.288
- Ligands: AES.3
Ligand excluded by PLIPSO4.14: 8 residues within 4Å:- Chain B: R.138, I.176, P.230, E.231, V.232, A.237, A.352, V.354
Ligand excluded by PLIPSO4.15: 6 residues within 4Å:- Chain B: G.285, A.286, L.287, S.288
- Chain C: S.318, N.322
Ligand excluded by PLIPSO4.16: 7 residues within 4Å:- Chain B: T.134, L.135, N.207, S.250, L.287, S.288
- Ligands: AES.12
Ligand excluded by PLIPSO4.20: 8 residues within 4Å:- Chain C: R.138, I.176, P.230, E.231, V.232, A.237, A.352, V.354
Ligand excluded by PLIPSO4.21: 5 residues within 4Å:- Chain C: D.112, V.115
- Chain D: I.43, F.143, H.145
Ligand excluded by PLIPSO4.22: 6 residues within 4Å:- Chain B: S.318, N.322
- Chain C: G.285, A.286, L.287, S.288
Ligand excluded by PLIPSO4.23: 6 residues within 4Å:- Chain A: T.316
- Chain C: F.124, S.125, L.303
- Chain D: L.287
- Ligands: AES.26
Ligand excluded by PLIPSO4.24: 7 residues within 4Å:- Chain C: T.134, L.135, N.207, S.250, L.287, S.288
- Ligands: AES.18
Ligand excluded by PLIPSO4.28: 7 residues within 4Å:- Chain D: R.138, P.230, E.231, V.232, A.237, A.352, V.354
Ligand excluded by PLIPSO4.29: 6 residues within 4Å:- Chain A: S.318, N.322
- Chain D: G.285, A.286, L.287, S.288
Ligand excluded by PLIPSO4.30: 7 residues within 4Å:- Chain D: T.134, L.135, N.207, S.250, L.287, S.288
- Ligands: AES.26
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Merz, T. et al., Autoproteolytic and catalytic mechanisms for the beta-aminopeptidase BapA--a member of the Ntn hydrolase family. Structure (2012)
- Release Date
- 2011-06-08
- Peptides
- Beta-peptidyl aminopeptidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 8 x AES: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE(Non-covalent)
- 16 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Merz, T. et al., Autoproteolytic and catalytic mechanisms for the beta-aminopeptidase BapA--a member of the Ntn hydrolase family. Structure (2012)
- Release Date
- 2011-06-08
- Peptides
- Beta-peptidyl aminopeptidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D