SMTL ID : 3n37.1

Ribonucleotide Reductase Dimanganese(II)-NrdF from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.67, E.98, H.101, E.158, E.192 Ligands: MN.2 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.67, A:E.98, A:H.101, A:E.158, A:E.192, H2O.4 MN.2: 5 residues within 4Å: Chain A: E.98, E.158, E.192, H.195 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.98, A:E.158, A:E.192, A:H.195, H2O.15 MN.4: 6 residues within 4Å: Chain B: D.67, E.98, H.101, E.158, E.192 Ligands: MN.5 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.67, B:E.98, B:H.101, B:E.158, B:E.192, H2O.19 MN.5: 5 residues within 4Å: Chain B: E.98, E.158, E.192, H.195 Ligands: MN.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.98, B:E.158, B:E.192, B:H.195, H2O.30

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: I.42, Q.46 No protein-ligand interaction detected (PLIP) GOL.6: 2 residues within 4Å: Chain B: I.42, Q.46 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boal, A.K. et al., Structural basis for activation of class Ib ribonucleotide reductase. Science (2010)

Release Date

2010-08-18

Peptides

Ribonucleoside-diphosphate reductase 2 subunit beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ribonucleoside-diphosphate reductase 2 subunit beta

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