SMTL ID : 3n3g.2 (1 other biounit)

4-(3-Trifluoromethylphenyl)-pyrimidine-2-carbonitrile as cathepsin S inhibitors: N3, not N1 is critically important

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.82, S.103, R.106 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.103 Water bridges: A:R.106, A:R.106, A:R.106, A:R.106 Salt bridges: A:R.106

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: T.14, E.15, L.45, V.46, S.47 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.15, A:S.47, A:S.47 Water bridges: A:S.47, A:S.47 GOL.3: 5 residues within 4Å: Chain A: V.16, K.17, Y.18, G.187, H.188 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.188 Water bridges: A:Y.18, A:Y.18

1 x 935: (E)-1-(6-{4-[3-(4-METHYLPIPERAZIN-1-YL)PROPOXY]-3-(TRIFLUOROMETHYL)PHENYL}PYRIDIN-2-YL)METHANIMINE(Covalent)

935.4: 12 residues within 4Å: Chain A: G.23, C.25, N.67, G.68, G.69, M.71, G.137, V.162, N.163, H.164, G.165, F.211 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.211 Hydrogen bonds: A:C.25, A:G.165 Water bridges: A:Q.19, A:N.163, A:H.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cai, J. et al., 4-(3-Trifluoromethylphenyl)-pyrimidine-2-carbonitrile as cathepsin S inhibitors: N3, not N1 is critically important. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-07-14

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cathepsin S

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