SMTL ID : 3n40.1

Crystal structure of the immature envelope glycoprotein complex of Chikungunya virus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.8 No protein-ligand interaction detected (PLIP)

1 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG.2: 4 residues within 4Å: Chain B: P.16, R.136, G.141, N.143 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.136, B:N.143 Hydrophobic interactions: B:P.16

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.323 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.323

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: F.66, N.67, V.68, Y.69, H.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.68 Salt bridges: A:H.122 ACT.5: 5 residues within 4Å: Chain A: R.140, I.153, T.154, G.155, T.156 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.153, A:T.156 Salt bridges: A:R.140 ACT.6: 3 residues within 4Å: Chain A: H.122, D.123, W.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.124 Water bridges: A:D.123 ACT.7: 3 residues within 4Å: Chain A: T.62, D.64, N.65 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.62 Hydrogen bonds: A:D.64 Water bridges: A:S.61, A:S.61, A:D.64 ACT.8: 6 residues within 4Å: Chain B: S.79, C.80, K.81, L.221, V.222, L.223 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.223, B:L.223 Salt bridges: B:K.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voss, J.E. et al., Glycoprotein organization of Chikungunya virus particles revealed by X-ray crystallography. Nature (2010)

Release Date

2010-12-01

Peptides

P62 envelope glycoprotein: A
E1 envelope glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
F

P62 envelope glycoprotein

E1 envelope glycoprotein