- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PRO- GLN- ILE- ILE- ASN- ARG- PRO: Peptidase(Non-covalent)
- 6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 4 residues within 4Å:- Chain A: C.37, Q.38, G.39, D.40
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.38, A:G.39, A:D.40
- Water bridges: A:D.40, A:D.40
BME.6: 4 residues within 4Å:- Chain B: C.37, Q.38, G.39, D.40
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.38, B:G.39, B:D.40
- Water bridges: B:D.40, B:D.40
BME.10: 4 residues within 4Å:- Chain C: C.37, Q.38, G.39, D.40
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Q.38, C:G.39, C:D.40
- Water bridges: C:D.40, C:D.40
BME.14: 4 residues within 4Å:- Chain D: C.37, Q.38, G.39, D.40
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Q.38, D:G.39, D:D.40
- Water bridges: D:D.40
BME.18: 4 residues within 4Å:- Chain E: C.37, Q.38, G.39, D.40
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Q.38, E:G.39, E:D.40
- Water bridges: E:D.40
BME.22: 4 residues within 4Å:- Chain F: C.37, Q.38, G.39, D.40
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:Q.38, F:G.39, F:D.40
- Water bridges: F:D.40
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 2 residues within 4Å:- Chain A: D.119
- Chain D: D.119
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.119
ACT.7: 2 residues within 4Å:- Chain B: D.119
- Chain F: D.119
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.119
ACT.11: 2 residues within 4Å:- Chain C: D.119
- Chain E: D.119
1 PLIP interactions:1 interactions with chain C- Water bridges: C:D.119
ACT.15: 2 residues within 4Å:- Chain A: D.119
- Chain D: D.119
1 PLIP interactions:1 interactions with chain D- Water bridges: D:D.119
ACT.19: 2 residues within 4Å:- Chain C: D.119
- Chain E: D.119
1 PLIP interactions:1 interactions with chain E- Water bridges: E:D.119
ACT.23: 2 residues within 4Å:- Chain B: D.119
- Chain F: D.119
1 PLIP interactions:1 interactions with chain F- Water bridges: F:D.119
- 6 x ZN: ZINC ION(Non-covalent)
ZN.4: 4 residues within 4Å:- Chain A: G.74, D.77, D.94, T.96
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:G.74, A:D.94, A:T.96, H2O.4, H2O.5
ZN.8: 4 residues within 4Å:- Chain B: G.74, D.77, D.94, T.96
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:G.74, B:D.94, B:T.96, H2O.10, H2O.10
ZN.12: 4 residues within 4Å:- Chain C: G.74, D.77, D.94, T.96
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:G.74, C:D.94, C:T.96, H2O.15, H2O.16
ZN.16: 4 residues within 4Å:- Chain D: G.74, D.77, D.94, T.96
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:G.74, D:D.94, D:T.96, H2O.21, H2O.21
ZN.20: 4 residues within 4Å:- Chain E: G.74, D.77, D.94, T.96
5 PLIP interactions:3 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:G.74, E:D.94, E:T.96, H2O.26, H2O.26
ZN.24: 4 residues within 4Å:- Chain F: G.74, D.77, D.94, T.96
5 PLIP interactions:3 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:G.74, F:D.94, F:T.96, H2O.31, H2O.32
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osipiuk, J. et al., Characterization of member of DUF1888 protein family, self-cleaving and self-assembling endopeptidase. J.Biol.Chem. (2012)
- Release Date
- 2010-06-02
- Peptides
- Peptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PRO- GLN- ILE- ILE- ASN- ARG- PRO: Peptidase(Non-covalent)
- 6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osipiuk, J. et al., Characterization of member of DUF1888 protein family, self-cleaving and self-assembling endopeptidase. J.Biol.Chem. (2012)
- Release Date
- 2010-06-02
- Peptides
- Peptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A