SMTL ID : 3n59.1 (1 other biounit)

Type II dehydroquinase from Mycobacterium Tuberculosis complexed with 3-dehydroshikimate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

homo-12-mer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.113, H.140, P.145 Chain G: R.139 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain B: R.113, H.140, S.141, P.145 Chain C: F.137 Chain F: R.139 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain B: R.139 Chain F: R.113, H.140, S.141, P.145 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain C: R.113, H.140, S.141, P.145 Chain H: R.139 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain D: R.113, H.140, S.141, P.145 Chain I: R.139 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain D: R.139 Chain I: R.113, H.140, S.141, P.145 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain E: R.139 Chain K: R.113, H.140, P.145 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain E: R.113, H.140, P.145 Chain K: R.139 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain A: R.139 Chain G: R.113, H.140, S.141, P.145 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain C: R.139 Chain H: R.113, H.140, P.145 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain J: R.113, H.140, S.141, P.145 Chain L: R.139 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain J: R.139 Chain L: R.113, H.140, P.145 Ligand excluded by PLIP

2 x 3DS: (4S,5R)-4,5-dihydroxy-3-oxocyclohex-1-ene-1-carboxylic acid(Non-covalent)

3DS.4: 14 residues within 4Å: Chain B: D.114 Chain C: L.39, R.45, Y.50, N.101, G.103, G.104, H.107, H.127, I.128, S.129, V.131, R.134, R.138 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:Y.50 Hydrogen bonds: C:R.45, C:R.45, C:N.101, C:I.128, C:S.129, C:S.129, C:R.138, B:D.114, B:D.114 Water bridges: C:G.104, C:G.104 Salt bridges: C:H.127 3DS.10: 13 residues within 4Å: Chain F: D.114 Chain G: R.45, Y.50, N.101, G.103, G.104, H.107, H.127, I.128, S.129, V.131, R.134, R.138 13 PLIP interactions: 11 interactions with chain G, 2 interactions with chain F Hydrophobic interactions: G:Y.50 Hydrogen bonds: G:R.45, G:R.45, G:N.101, G:I.128, G:S.129, G:S.129, G:R.138, F:D.114, F:D.114 Water bridges: G:G.104, G:G.104 Salt bridges: G:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dias, M.V. et al., Structural investigation of inhibitor designs targeting 3-dehydroquinate dehydratase from the shikimate pathway of Mycobacterium tuberculosis. Biochem.J. (2011)

Release Date

2010-07-21

Peptides

3-dehydroquinate dehydratase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

3-dehydroquinate dehydratase

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