SMTL ID : 3n5c.1 (1 other biounit)

Crystal Structure of Arf6DELTA13 complexed with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: L.8, D.9, A.10, A.11, G.12, K.13, T.14, T.15, D.50, N.109, K.110, D.112, L.113, C.142, A.143, T.144 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:L.8, A:A.10, A:A.11, A:G.12, A:K.13, A:T.14, A:T.14, A:T.15, A:T.15, A:N.109, A:K.110, A:K.110, A:A.143, A:T.144 Water bridges: A:K.13, A:K.13, A:T.15 Salt bridges: A:K.13, A:D.112 pi-Cation interactions: A:K.110

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: R.58, R.62, H.63, Y.65, R.92 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.58, R.62 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biou, V. et al., SAXS and X-ray crystallography suggest an unfolding model for the GDP/GTP conformational switch of the small GTPase Arf6. J.Mol.Biol. (2010)

Release Date

2010-08-18

Peptides

ADP-ribosylation factor 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribosylation factor 6

Related Entries With Identical Sequence