SMTL ID : 3n5f.1

Crystal Structure of L-N-carbamoylase from Geobacillus stearothermophilus CECT43

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 6 residues within 4Å: Chain A: G.227 Chain B: A.210, T.257, V.259, P.351, G.353 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.210, B:P.351 Hydrogen bonds: B:T.257 IPA.3: 2 residues within 4Å: Chain B: G.49, L.50 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.50

2 x CO: COBALT (II) ION(Non-covalent)

CO.2: 6 residues within 4Å: Chain A: H.79, D.90, E.124, E.125, H.189, H.356 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.79, A:D.90, A:H.189 CO.5: 4 residues within 4Å: Chain B: H.79, D.90, E.124, H.189 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.79, B:D.90, B:H.189

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.4: 6 residues within 4Å: Chain A: H.225, N.273 Chain B: R.286, A.354, A.355, H.380 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.273, B:R.286, B:R.286, B:A.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Rodriguez, S. et al., Mutational and structural analysis of L-N-carbamoylase reveals new insights into a peptidase m20/m25/m40 family member. J.Bacteriol. (2012)

Release Date

2011-05-25

Peptides

N-carbamoyl-L-amino acid hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-carbamoyl-L-amino acid hydrolase