SMTL ID : 3n6w.1

Crystal structure of human gamma-butyrobetaine hydroxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.54, C.56, C.59, H.98 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.54, A:C.56, A:C.59, A:H.98 ZN.7: 4 residues within 4Å: Chain B: C.54, C.56, C.59, H.98 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.54, B:C.56, B:C.59, B:H.98

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: N.261, P.262, Q.263, A.264, E.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.263, A:A.264, A:E.332 SO4.3: 5 residues within 4Å: Chain A: Y.282, C.283, D.284 Chain B: R.391, R.398 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.391, B:R.398 Hydrogen bonds: A:D.284 SO4.4: 3 residues within 4Å: Chain A: W.106, K.109, R.110 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.109, A:R.110 SO4.5: 2 residues within 4Å: Chain A: P.319 Chain B: R.117 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.117, B:K.299 Salt bridges: B:R.117 SO4.6: 2 residues within 4Å: Chain A: K.183, R.184 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.184 Salt bridges: A:K.183, A:R.184 SO4.8: 5 residues within 4Å: Chain B: N.261, P.262, Q.263, A.264, E.332 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.263, B:A.264, B:E.332 SO4.9: 5 residues within 4Å: Chain A: R.391, R.398 Chain B: Y.282, C.283, D.284 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.284 Salt bridges: A:R.391, A:R.398 SO4.10: 3 residues within 4Å: Chain B: W.106, K.109, R.110 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.109, B:R.110 SO4.11: 2 residues within 4Å: Chain A: R.117 Chain B: P.319 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.117, A:K.299 Salt bridges: A:R.117 SO4.12: 2 residues within 4Å: Chain B: K.183, R.184 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.184 Salt bridges: B:K.183, B:R.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tars, K. et al., Crystal structure of human gamma-butyrobetaine hydroxylase. Biochem.Biophys.Res.Commun. (2010)

Release Date

2010-07-21

Peptides

Gamma-butyrobetaine dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Gamma-butyrobetaine dioxygenase