SMTL ID : 3n8h.1

Crystal Structure of Pantoate-beta-alanine Ligase from Francisella tularensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x PRO: PROLINE(Non-covalent)

PRO.1: 9 residues within 4Å: Chain A: M.32, Q.63, R.124, H.127, D.153, Q.156, R.190 Ligands: AMP.2, GOL.3 5 PLIP interactions: 2 Ligand-Ligand interactions, 3 interactions with chain A Hydrogen bonds: P.1, P.1, A:R.124, A:R.190, A:R.190 PRO.6: 9 residues within 4Å: Chain B: M.32, Q.63, R.124, H.127, D.153, Q.156, R.190 Ligands: AMP.7, GOL.8 4 PLIP interactions: 4 interactions with chain B, Hydrogen bonds: B:Q.63, B:R.124, B:R.190 Water bridges: B:R.190

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 18 residues within 4Å: Chain A: P.30, T.31, M.32, H.36, G.38, H.39, L.42, L.149, G.150, K.152, D.153, Q.156, P.177, T.178, Q.179, L.187 Ligands: PRO.1, GOL.3 17 PLIP interactions: 16 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:G.150, A:K.152, A:D.153, A:D.153, A:D.153, A:Q.179, A:Q.179, A:L.187 Water bridges: A:H.39, A:Y.73, A:Y.148, A:Q.156, A:Q.156, A:S.189, A:S.189, P.1 Salt bridges: A:H.39 AMP.7: 18 residues within 4Å: Chain B: P.30, T.31, M.32, H.36, G.38, H.39, L.42, L.149, G.150, K.152, D.153, Q.156, P.177, T.178, Q.179, L.187 Ligands: PRO.6, GOL.8 13 PLIP interactions: 11 interactions with chain B, 2 Ligand-Ligand interactions Hydrogen bonds: B:Y.73, B:Y.73, B:G.150, B:K.152, B:D.153, B:Q.156, B:Q.179, B:Q.179, B:L.187 Water bridges: B:S.189, P.6, P.6 Salt bridges: B:H.39

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: P.30, T.31, M.32, Q.63, V.134, V.135, Q.156 Ligands: PRO.1, AMP.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.31, A:Q.63, A:Q.156 Water bridges: A:F.58 GOL.4: 2 residues within 4Å: Chain A: N.37, Q.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.37, A:Q.181 Water bridges: A:N.37, A:Q.181 GOL.8: 8 residues within 4Å: Chain B: M.32, Q.63, M.131, V.134, V.135, Q.156 Ligands: PRO.6, AMP.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.63, B:Q.156, B:Q.156 Water bridges: B:F.58 GOL.9: 5 residues within 4Å: Chain B: T.178, Q.179, R.180, S.263, C.264 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.180, B:R.180 Water bridges: B:T.178

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 4 residues within 4Å: Chain A: P.61, F.64, P.67, Y.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Pantoate-beta-alanine Ligase from Francisella tularensis. To be Published (2010)

Release Date

2010-06-16

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate synthetase

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