SMTL ID : 3na8.1

Crystal Structure of a putative dihydrodipicolinate synthetase from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: V.175, V.178, D.179, V.181 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:V.175, A:V.178, A:D.179, A:V.181, H2O.7, H2O.82 MG.3: 4 residues within 4Å: Chain B: V.175, V.178, D.179, V.181 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:V.175, B:V.178, B:D.179, B:V.181, H2O.303, H2O.429 MG.4: 4 residues within 4Å: Chain C: V.175, V.178, D.179, V.181 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:V.175, C:V.178, C:D.179, C:V.181, H2O.523, H2O.641 MG.6: 4 residues within 4Å: Chain D: V.175, V.178, D.179, V.181 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:V.175, D:V.178, D:D.179, D:V.181, H2O.687, H2O.825

3 x MLT: D-MALATE(Non-covalent)

MLT.2: 6 residues within 4Å: Chain A: R.53, L.233, I.234, P.235, T.236, R.313 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.233, A:T.236, A:T.236, A:R.313 Water bridges: A:L.237 Salt bridges: A:R.53, A:R.313 MLT.5: 6 residues within 4Å: Chain C: R.53, L.233, I.234, P.235, T.236, R.313 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:L.233, C:T.236, C:R.313 Water bridges: C:T.236 Salt bridges: C:R.53, C:R.313 MLT.7: 7 residues within 4Å: Chain D: L.233, I.234, P.235, T.236, L.237, N.238, R.313 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:P.235 Hydrogen bonds: D:T.236, D:N.238 Salt bridges: D:R.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal Structure of a putative dihydrodipicolinate synthetase from Pseudomonas aeruginosa. To be Published

Release Date

2011-06-01

Peptides

putative dihydrodipicolinate synthetase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

putative dihydrodipicolinate synthetase