- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x URF: 5-FLUOROURACIL(Non-covalent)
URF.2: 6 residues within 4Å:- Chain A: R.182, D.242, D.343, D.344, R.392
- Ligands: MG.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.182, A:D.343, A:D.344
- Halogen bonds: A:R.182
URF.13: 6 residues within 4Å:- Chain B: R.182, D.242, D.343, D.344, R.392
- Ligands: MG.12
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.182, B:D.343, B:D.344, B:D.344
- Halogen bonds: B:R.182
- 4 x MN3: MANGANESE (III) ION(Non-covalent)
MN3.3: 4 residues within 4Å:- Chain A: K.207, C.210, G.218
- Ligands: MN3.4
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:K.207, A:C.210
MN3.4: 4 residues within 4Å:- Chain A: E.208, C.210, I.211
- Ligands: MN3.3
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:C.210, H2O.1, H2O.5
MN3.14: 4 residues within 4Å:- Chain B: K.207, C.210, G.218
- Ligands: MN3.15
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:K.207, B:C.210
MN3.15: 4 residues within 4Å:- Chain B: E.208, C.210, I.211
- Ligands: MN3.14
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:C.210, H2O.6, H2O.10
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: G.48, S.49, S.58, L.59
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.49, A:S.49, A:L.59
SO4.6: 2 residues within 4Å:- Chain A: P.79, Q.80
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.80
SO4.7: 5 residues within 4Å:- Chain A: D.114, T.117, K.127, M.192, G.301
3 PLIP interactions:3 interactions with chain A- Water bridges: A:D.114, A:D.114
- Salt bridges: A:K.127
SO4.8: 2 residues within 4Å:- Chain A: W.131, G.133
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.133
SO4.9: 6 residues within 4Å:- Chain A: G.397, D.398, G.401, W.402
- Chain B: N.234, F.235
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.234
SO4.10: 2 residues within 4Å:- Chain A: R.382, Q.383
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.382, A:Q.383, A:Q.383
SO4.16: 4 residues within 4Å:- Chain B: G.48, S.49, S.58, L.59
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.49, B:S.49, B:L.59
SO4.17: 2 residues within 4Å:- Chain B: P.79, Q.80
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.80
SO4.18: 5 residues within 4Å:- Chain B: D.114, T.117, K.127, M.192, G.301
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.117
- Water bridges: B:D.114, B:D.114
- Salt bridges: B:K.127
SO4.19: 2 residues within 4Å:- Chain B: W.131, G.133
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.133
SO4.20: 6 residues within 4Å:- Chain A: N.234, F.235
- Chain B: G.397, D.398, G.401, W.402
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.234
SO4.21: 2 residues within 4Å:- Chain B: R.382, Q.383
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.382, B:Q.383, B:Q.383
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, K.H. et al., Crystal structures and functional analysis of murine norovirus RNA-dependent RNA polymerase. To be Published
- Release Date
- 2011-06-08
- Peptides
- RNA dependent RNA polymerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x URF: 5-FLUOROURACIL(Non-covalent)
- 4 x MN3: MANGANESE (III) ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, K.H. et al., Crystal structures and functional analysis of murine norovirus RNA-dependent RNA polymerase. To be Published
- Release Date
- 2011-06-08
- Peptides
- RNA dependent RNA polymerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A