SMTL ID : 3naq.1

Apo-form of NAD-dependent formate dehydrogenase from higher-plant Arabidopsis thaliana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.333, P.341 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.342, A:E.343 Salt bridges: A:R.333 SO4.2: 2 residues within 4Å: Chain A: E.338, D.339 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.339 Water bridges: A:D.339, A:D.339 SO4.3: 4 residues within 4Å: Chain A: Y.163, R.164, N.305 Chain B: K.24 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Salt bridges: B:K.24, A:R.164 Hydrogen bonds: A:Y.163, A:Y.163, A:N.305 SO4.4: 2 residues within 4Å: Chain B: R.333, P.341 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.333 SO4.5: 2 residues within 4Å: Chain B: E.338, D.339 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.339 SO4.6: 4 residues within 4Å: Chain A: K.24 Chain B: Y.163, R.164, N.305 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:K.24, B:R.164 Hydrogen bonds: B:Y.163, B:N.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shabalin, I.G. et al., Structures of the apo and holo forms of NAD-dependent formate dehydrogenase from the higher-plant Arabidopsis Thaliana. to be published

Release Date

2010-07-07

Peptides

Formate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Formate dehydrogenase