SMTL ID : 3naz.1

Basal state form of Yeast Glycogen Synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

2 x UNK- UNK- UNK- UNK- UNK: PEPTIDE(Non-covalent)

UNK-UNK-UNK-UNK-UNK.1: 5 residues within 4Å: Chain C: G.339, R.340, P.378, F.500, Y.512 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:P.378, C:F.500, C:Y.512 Hydrogen bonds: C:R.340 UNK-UNK-UNK-UNK-UNK.2: 6 residues within 4Å: Chain D: G.339, R.340, F.500, Y.512, E.537 Ligands: SO4.17 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.500, D:F.500, D:Y.512 Hydrogen bonds: D:R.340, D:Y.341

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.40, Y.45, S.46, K.49, K.295 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: R.340, K.346, W.531, G.532, Y.533 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: Q.602, N.605, R.609 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: R.447, R.448 Chain D: R.40 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: R.40, S.46, K.49, K.295 Ligand excluded by PLIP SO4.8: 6 residues within 4Å: Chain B: R.340, K.346, E.529, W.531, G.532, Y.533 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: Q.602, N.605, R.609 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain B: R.447, R.448 Chain C: R.40 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: R.40 Chain C: R.447, R.448 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain C: R.40, S.46, K.49, K.295 Ligand excluded by PLIP SO4.13: 7 residues within 4Å: Chain C: R.219, R.340, K.346, E.529, P.530, W.531, G.532 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain C: Q.602, N.605, R.609 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain A: R.40 Chain D: R.447, R.448 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain D: R.340, K.346, G.532, Y.533, T.534 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain D: R.40, S.46, K.49, K.295 Ligands: UNK-UNK-UNK-UNK-UNK-UNK.2 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain D: Q.602, N.605, R.609 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baskaran, S. et al., Structural basis for glucose-6-phosphate activation of glycogen synthase. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-10-06

Peptides

Glycogen [starch] synthase isoform 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glycogen [starch] synthase isoform 2

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