SMTL ID : 3nb2.4 (3 other biounits)

Crystal structure of E. coli O157:H7 effector protein NleL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: P.231, Y.232 No protein-ligand interaction detected (PLIP) GOL.2: 3 residues within 4Å: Chain A: Y.567, H.595, E.598 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.562, A:E.598 Water bridges: A:Y.567 GOL.3: 4 residues within 4Å: Chain A: D.265, Y.290, S.300, Y.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.290, A:S.300 GOL.4: 4 residues within 4Å: Chain A: R.455, Y.467, Q.474, K.477 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.455, A:Q.474, A:K.477, A:K.477 GOL.5: 6 residues within 4Å: Chain A: N.187, L.196, L.197, N.200, D.239, S.240 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.187, A:L.196, A:N.200 Water bridges: A:D.239

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 3 residues within 4Å: Chain A: R.65, N.85, E.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.85 Salt bridges: A:R.65, A:E.86 MES.7: 2 residues within 4Å: Chain A: D.203, D.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.204 Salt bridges: A:D.204

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 6 residues within 4Å: Chain A: R.315, D.316, G.317, M.318, Q.319, E.320 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.317, A:G.317, A:M.318, A:Q.319, A:Q.319, A:E.320 SO4.9: 4 residues within 4Å: Chain A: R.230, P.231, Y.232, V.233 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.230, A:Y.232, A:V.233 SO4.10: 3 residues within 4Å: Chain A: F.229, T.266, W.270 No protein-ligand interaction detected (PLIP) SO4.11: 1 residues within 4Å: Chain A: R.65 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, D.Y. et al., Biochemical and Structural Studies of a HECT-like Ubiquitin Ligase from Escherichia coli O157:H7. J.Biol.Chem. (2011)

Release Date

2010-10-27

Peptides

secreted effector protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

secreted effector protein

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