SMTL ID : 3nb9.1

Crystal structure of radical H88Q Synechocystis sp. PCYA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: G.98, L.99, P.130, A.132, Y.133, Q.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.98, A:Q.190 Water bridges: A:A.132 EDO.2: 4 residues within 4Å: Chain A: S.31, L.184, Q.185, C.188 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.31

1 x BLA: BILIVERDINE IX ALPHA(Non-covalent)

BLA.3: 25 residues within 4Å: Chain A: E.76, I.86, Q.88, C.89, V.90, G.103, C.104, D.105, V.107, S.114, A.115, I.117, R.149, L.151, P.152, W.154, F.158, F.164, Q.216, N.219, K.221, T.222, V.225, L.226, F.244 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.86, A:I.86, A:V.90, A:D.105, A:V.107, A:V.107, A:V.107, A:A.115, A:I.117, A:I.117, A:L.151, A:W.154, A:F.158, A:F.158, A:F.164, A:K.221, A:K.221, A:T.222, A:V.225, A:V.225, A:L.226 Hydrogen bonds: A:D.105, A:D.105, A:D.105, A:N.219 Water bridges: A:R.149, A:R.149, A:R.149, A:R.149, A:T.222, A:T.222 Salt bridges: A:R.149, A:K.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kohler, A.C. et al., Structural basis for hydration dynamics in radical stabilization of bilin reductase mutants. Biochemistry (2010)

Release Date

2010-10-06

Peptides

Phycocyanobilin:ferredoxin oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phycocyanobilin:ferredoxin oxidoreductase

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