SMTL ID : 3nbz.1 (1 other biounit)

Crystal structure of the HIV-1 Rev NES-CRM1-RanGTP nuclear export complex (crystal I)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 26 residues within 4Å: Chain C: D.14, G.15, G.16, T.17, G.18, K.19, T.20, T.21, F.31, E.32, K.33, K.34, Y.35, V.36, A.37, T.38, D.61, T.62, N.118, K.119, D.121, I.122, S.146, A.147, K.148 Ligands: MG.2 27 PLIP interactions: 27 interactions with chain C Hydrogen bonds: C:G.16, C:T.17, C:G.18, C:K.19, C:T.20, C:T.20, C:T.21, C:T.21, C:E.32, C:Y.35, C:T.38, C:T.38, C:T.38, C:N.118, C:K.119, C:K.119, C:A.147, C:K.148 Water bridges: C:K.19, C:K.19, C:L.65 Salt bridges: C:K.19, C:K.19, C:D.121 pi-Stacking: C:F.31, C:F.31 pi-Cation interactions: C:K.119

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain C: G.15, G.16, Y.35, A.37 Ligands: GTP.1 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:Y.35, H2O.13

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: E.178 Chain C: R.106 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guttler, T. et al., NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-10-27

Peptides

Exportin-1: A
Snurportin-1: B
GTP-binding nuclear protein Ran: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Exportin-1

Snurportin-1

GTP-binding nuclear protein Ran

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