SMTL ID : 3nc5.1 (1 other biounit)

CYP134A1 structure with an open substrate binding loop

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: L.100, R.126, I.133, M.179, N.265, A.269, A.270, P.273, T.277, L.310, P.315, V.316, I.319, R.321, A.381, F.382, G.383, H.387, N.388, C.389, V.390, G.391, F.394, A.395 Ligands: GOL.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:L.100, A:I.133, A:A.269, A:A.270, A:P.273, A:P.315, A:V.316, A:V.316, A:I.319, A:F.382, A:F.382, A:A.395 Hydrogen bonds: A:R.126, A:N.265 Salt bridges: A:R.321 pi-Stacking: A:F.382 Metal complexes: A:C.389

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: A.269, P.273, V.316, Y.427 Ligands: HEM.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.269, A:Y.427, A:Y.427

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.199, T.202, S.203 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.199, A:T.202 MG.4: 5 residues within 4Å: Chain A: F.59, Q.317, M.343, I.344, G.345 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Q.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cryle, M.J. et al., Structural and biochemical characterization of the cytochrome P450 CypX (CYP134A1) from Bacillus subtilis: a cyclo-L-leucyl-L-leucyl dipeptide oxidase. Biochemistry (2010)

Release Date

2010-08-11

Peptides

Cytochrome P450 cypX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 cypX

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