SMTL ID : 3ncj.1

Crystal structure of Fab15 Mut8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.151, H.189 Ligands: ACT.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.151, A:H.189, ACT.3 ZN.2: 3 residues within 4Å: Chain A: N.137, N.138 Chain B: H.172 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.172, H2O.5, H2O.7, H2O.13 ZN.5: 5 residues within 4Å: Chain A: C.214 Chain B: H.221, H.222, H.225 Ligands: ACT.7 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: B:H.221, B:H.225, A:C.214, ACT.7 ZN.6: 2 residues within 4Å: Chain B: D.52, D.55 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.52, B:D.55, B:D.55

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: D.151, K.188, H.189 Ligands: ZN.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.189 ACT.7: 7 residues within 4Å: Chain A: C.214 Chain B: S.136, H.221, H.222, H.223, H.225 Ligands: ZN.5 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.136 Salt bridges: B:H.221, B:H.225 Water bridges: A:C.214

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 12 residues within 4Å: Chain A: Q.160, E.161, S.162, S.176, S.177, T.178 Chain B: F.174, P.175, V.177, S.185, L.186, S.187 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.162, A:S.162, A:T.178, A:T.178, B:S.187 Water bridges: A:T.178, B:S.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, J. et al., Co-evolution of antibody stability and Vk CDR-L3 canonical structure. To be Published

Release Date

2010-08-18

Peptides

Fab15 Mut8 light chain: A
Fab15 Mut8 heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Fab15 Mut8 light chain

Fab15 Mut8 heavy chain

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