SMTL ID : 3ndo.1

Crystal structure of deoxyribose phosphate aldolase from mycobacterium smegmatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-dimer

Ligands

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.1: 2 residues within 4Å: Chain A: E.189, R.190 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.188

2 x UNL: UNKNOWN LIGAND

UNL.2: 12 residues within 4Å: Chain A: T.20, L.22, C.47, V.69, D.98, K.164, S.166, T.167, G.168, K.194, S.196, G.197 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.22, A:V.69 Hydrogen bonds: A:T.20, A:T.20, A:S.166, A:S.196 Water bridges: A:K.194 UNL.5: 12 residues within 4Å: Chain B: T.20, L.22, C.47, V.69, D.98, K.164, S.166, T.167, G.168, K.194, S.196, G.197 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.22, B:V.69 Hydrogen bonds: B:T.20, B:S.166, B:S.196 Water bridges: B:K.194

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: P.146, A.149, D.150, R.153 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.153 GOL.4: 3 residues within 4Å: Chain A: E.141, F.142, S.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.143 GOL.6: 4 residues within 4Å: Chain B: P.146, A.149, D.150, R.153 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.150, B:R.153, B:R.153 Water bridges: B:E.145 GOL.7: 4 residues within 4Å: Chain B: A.160, D.161, R.190, L.191 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.161, B:R.190, B:R.190 Water bridges: B:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2010-07-21

Peptides

Deoxyribose-phosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Deoxyribose-phosphate aldolase