- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x AIC: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID(Non-covalent)
AIC.2: 16 residues within 4Å:- Chain A: T.76, G.77, T.100, E.133, T.134, L.135, N.137, R.138, N.207, S.250, L.287, S.288
- Chain B: F.124, L.127, L.128
- Ligands: NDV.3
13 PLIP interactions:3 interactions with chain B, 10 interactions with chain A- Hydrophobic interactions: B:L.127, B:L.128, B:L.128, A:T.100, A:L.287
- Hydrogen bonds: A:L.135, A:N.207, A:S.250, A:S.250, A:L.287
- Water bridges: A:N.137, A:S.250
- Salt bridges: A:R.138
AIC.6: 15 residues within 4Å:- Chain A: F.124, L.127, L.128
- Chain B: T.76, G.77, T.100, E.133, T.134, L.135, N.137, R.138, N.207, S.250, L.287, S.288
14 PLIP interactions:12 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:T.100, B:L.287, A:L.127, A:L.128
- Hydrogen bonds: B:L.135, B:N.137, B:N.207, B:S.250, B:S.250, B:S.250, B:L.287
- Water bridges: B:L.287, B:S.288
- Salt bridges: B:R.138
AIC.8: 15 residues within 4Å:- Chain C: T.76, G.77, T.100, E.133, T.134, L.135, N.137, R.138, N.207, S.250, L.287, S.288
- Chain D: F.124, L.127, L.128
12 PLIP interactions:2 interactions with chain D, 10 interactions with chain C- Hydrophobic interactions: D:L.127, D:L.128, C:T.100, C:L.287
- Hydrogen bonds: C:L.135, C:N.137, C:N.207, C:S.250, C:S.250, C:L.287
- Water bridges: C:L.287
- Salt bridges: C:R.138
AIC.9: 16 residues within 4Å:- Chain C: F.124, L.127, L.128
- Chain D: T.76, G.77, T.100, E.133, T.134, L.135, N.137, R.138, N.207, S.250, L.287, S.288
- Ligands: NDV.10
15 PLIP interactions:12 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:T.100, D:L.287, C:L.127, C:L.128, C:L.128
- Hydrogen bonds: D:L.135, D:N.207, D:S.250, D:S.250, D:S.250, D:L.287
- Water bridges: D:N.137, D:S.288, D:G.289
- Salt bridges: D:R.138
- 2 x NDV: (2S,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Non-covalent)
NDV.3: 6 residues within 4Å:- Chain A: R.138, E.231, V.232, A.237, A.238
- Ligands: AIC.2
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.232, A:A.237
- Hydrogen bonds: A:R.138
- Salt bridges: A:R.138
- pi-Cation interactions: A:R.138
NDV.10: 6 residues within 4Å:- Chain D: R.138, I.176, V.232, A.237, A.238
- Ligands: AIC.9
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:I.176, D:V.232, D:A.237
- Salt bridges: D:R.138
- pi-Cation interactions: D:R.138
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heck, T. et al., Crystal structures and inhibition of the beta-aminopeptidase BapA, a new ampicillin-recognizing member of the N-terminal nucleophile hydrolase family. To be Published
- Release Date
- 2011-09-28
- Peptides
- Beta-peptidyl aminopeptidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x AIC: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID(Non-covalent)
- 2 x NDV: (2S,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heck, T. et al., Crystal structures and inhibition of the beta-aminopeptidase BapA, a new ampicillin-recognizing member of the N-terminal nucleophile hydrolase family. To be Published
- Release Date
- 2011-09-28
- Peptides
- Beta-peptidyl aminopeptidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D