SMTL ID : 3neh.1 (1 other biounit)

Crystal structure of the protein LMO2462 from Listeria monocytogenes complexed with ZN and phosphonate mimic of dipeptide L-Leu-D-Ala

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x L3A: (2R)-3-[(R)-[(1R)-1-amino-3-methylbutyl](hydroxy)phosphoryl]-2-methylpropanoic acid(Non-covalent)

L3A.1: 15 residues within 4Å: Chain A: H.9, D.11, Y.14, F.51, E.107, W.134, H.174, H.194, R.205, Y.227, F.230, D.263, G.266 Ligands: ZN.2, ZN.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.14, A:Y.227, A:F.230 Hydrogen bonds: A:E.107 Water bridges: A:N.135 Salt bridges: A:H.174, A:H.194, A:R.205

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.9, D.11, E.107, D.263 Ligands: L3A.1, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.9, A:D.11, A:D.11, A:E.107 ZN.3: 6 residues within 4Å: Chain A: E.107, H.174, H.194, R.205 Ligands: L3A.1, ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.107, A:H.174, A:H.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of the protein LMO2462 from Listeria monocytogenes complexed with ZN and phosphonate mimic of dipeptide L-Leu-D-Ala. To be Published

Release Date

2010-06-30

Peptides

Renal dipeptidase family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Renal dipeptidase family protein

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