SMTL ID : 3nes.1

V30M mutant human transthyretin (TTR) complexed with GC-1 (V30M:GC-1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x B72: {4-[4-hydroxy-3-(1-methylethyl)benzyl]-3,5-dimethylphenoxy}acetic acid(Non-covalent)

B72.1: 12 residues within 4Å: Chain A: K.6, L.8, E.45, A.99, A.100, L.101, S.108 Chain C: M.4, K.6, A.99, L.101 Ligands: B72.6 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:K.6, C:A.99, C:L.101, A:L.8, A:A.99, A:L.101 Hydrogen bonds: A:K.6 Salt bridges: A:K.6 B72.4: 12 residues within 4Å: Chain B: M.4, K.6, L.8, E.45, A.99, A.100, L.101 Chain D: K.6, A.99, L.101, T.110 Ligands: B72.9 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:K.6, B:L.8, B:A.99, D:A.99, D:L.101 pi-Cation interactions: D:K.6 B72.6: 12 residues within 4Å: Chain A: M.4, K.6, A.99, L.101 Chain C: K.6, L.8, E.45, A.99, A.100, L.101, S.108 Ligands: B72.1 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:L.8, C:A.99, C:L.101, A:K.6, A:A.99, A:L.101 Hydrogen bonds: C:K.6 Salt bridges: C:K.6 B72.9: 12 residues within 4Å: Chain B: K.6, A.99, L.101, T.110 Chain D: M.4, K.6, L.8, E.45, A.99, A.100, L.101 Ligands: B72.4 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:A.99, B:L.101, D:K.6, D:L.8, D:A.99 pi-Cation interactions: B:K.6

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: F.35, E.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.35 GOL.3: 4 residues within 4Å: Chain A: E.63, D.65, E.80, H.81 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.63, A:H.81 Water bridges: A:E.63, A:E.80, A:E.80 GOL.5: 3 residues within 4Å: Chain B: E.57, D.90, S.91 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.57, B:D.90 GOL.7: 2 residues within 4Å: Chain C: F.35, E.54 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:F.35 GOL.8: 4 residues within 4Å: Chain C: E.63, D.65, E.80, H.81 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:E.63, C:H.81 Water bridges: C:E.63, C:E.80, C:E.80 GOL.10: 3 residues within 4Å: Chain D: E.57, D.90, S.91 2 PLIP interactions: 2 interactions with chain D Water bridges: D:E.57, D:D.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trivella, D.B. et al., The binding of synthetic triiodo l-thyronine analogs to human transthyretin: molecular basis of cooperative and non-cooperative ligand recognition. J.Struct.Biol. (2011)

Release Date

2010-11-24

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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