- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 6 x OAE: (2S,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Non-covalent)
OAE.3: 13 residues within 4Å:- Chain A: T.76, G.77, E.133, T.134, L.135, N.137, N.207, S.250, L.287
- Chain C: F.124, L.127, L.128
- Ligands: SO4.5
14 PLIP interactions:10 interactions with chain A, 4 interactions with chain C- Hydrophobic interactions: A:L.135, A:L.287, C:F.124, C:L.127, C:L.128, C:L.128
- Hydrogen bonds: A:E.133, A:L.135, A:N.207, A:S.250, A:S.250, A:L.287
- Water bridges: A:N.137, A:N.137
OAE.4: 5 residues within 4Å:- Chain A: R.138, P.230, V.232, A.237, A.238
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:P.230, A:V.232, A:V.232, A:A.237
- Hydrogen bonds: A:A.237
- Water bridges: A:R.138, A:R.138, A:T.179
- Salt bridges: A:R.138
OAE.6: 14 residues within 4Å:- Chain B: T.76, G.77, T.100, E.133, T.134, L.135, N.137, N.207, S.250, L.287
- Chain D: F.124, L.127, L.128
- Ligands: SO4.11
16 PLIP interactions:4 interactions with chain D, 12 interactions with chain B- Hydrophobic interactions: D:F.124, D:L.127, D:L.128, D:L.128, B:T.100, B:L.135, B:L.287
- Hydrogen bonds: B:E.133, B:L.135, B:N.207, B:S.250, B:S.250, B:L.287
- Water bridges: B:L.135, B:N.137, B:L.287
OAE.10: 14 residues within 4Å:- Chain A: F.124, L.127, L.128
- Chain C: T.76, G.77, T.100, E.133, T.134, L.135, N.137, N.207, S.250, L.287
- Ligands: SO4.7
16 PLIP interactions:4 interactions with chain A, 12 interactions with chain C- Hydrophobic interactions: A:F.124, A:L.127, A:L.128, A:L.128, C:T.100, C:L.135, C:L.287
- Hydrogen bonds: C:E.133, C:L.135, C:N.207, C:S.250, C:S.250, C:L.287
- Water bridges: C:L.135, C:N.137, C:G.289
OAE.12: 13 residues within 4Å:- Chain B: F.124, L.127, L.128
- Chain D: T.76, G.77, E.133, T.134, L.135, N.137, N.207, S.250, L.287
- Ligands: SO4.14
14 PLIP interactions:10 interactions with chain D, 4 interactions with chain B- Hydrophobic interactions: D:L.287, B:F.124, B:L.127, B:L.128, B:L.128
- Hydrogen bonds: D:E.133, D:L.135, D:N.207, D:S.250, D:S.250, D:L.287
- Water bridges: D:L.135, D:N.137, D:N.137
OAE.13: 5 residues within 4Å:- Chain D: R.138, P.230, V.232, A.237, A.238
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:P.230, D:V.232, D:A.237
- Hydrogen bonds: D:A.237
- Water bridges: D:R.138, D:T.179, D:D.210, D:G.239, D:G.239
- Salt bridges: D:R.138
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 7 residues within 4Å:- Chain A: G.285, A.286, L.287, S.288
- Chain D: S.318, N.322
- Ligands: OAE.3
8 PLIP interactions:3 interactions with chain D, 5 interactions with chain A- Hydrogen bonds: D:S.318, D:S.318, D:N.322, A:L.287
- Water bridges: A:S.250, A:S.288, A:S.288, A:S.288
SO4.7: 7 residues within 4Å:- Chain B: S.318, N.322
- Chain C: G.285, A.286, L.287, S.288
- Ligands: OAE.10
7 PLIP interactions:5 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:A.286, C:L.287, B:S.318, B:N.322
- Water bridges: C:G.285, C:G.285, C:S.288
SO4.11: 7 residues within 4Å:- Chain B: G.285, A.286, L.287, S.288
- Chain C: S.318, N.322
- Ligands: OAE.6
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:A.286, B:L.287, C:S.318, C:S.318, C:N.322
- Water bridges: B:G.285, B:G.285, B:S.288, B:S.288
SO4.14: 7 residues within 4Å:- Chain A: S.318, N.322
- Chain D: G.285, A.286, L.287, S.288
- Ligands: OAE.12
9 PLIP interactions:6 interactions with chain D, 3 interactions with chain A- Hydrogen bonds: D:G.285, D:L.287, A:S.318, A:S.318, A:N.322
- Water bridges: D:S.250, D:G.285, D:G.285, D:S.288
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heck, T. et al., Crystal structure and inhibition of the beta-aminopeptidase BapA, a new ampicillin-recognizing member of the N-terminal nucleophile hydrolase family. To be Published
- Release Date
- 2011-09-28
- Peptides
- Beta-peptidyl aminopeptidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 6 x OAE: (2S,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heck, T. et al., Crystal structure and inhibition of the beta-aminopeptidase BapA, a new ampicillin-recognizing member of the N-terminal nucleophile hydrolase family. To be Published
- Release Date
- 2011-09-28
- Peptides
- Beta-peptidyl aminopeptidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D