SMTL ID : 3nfv.1

Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.95 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 5 residues within 4Å: Chain A: R.89, N.90, P.91, L.93, N.99 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.93 Hydrogen bonds: A:N.99 IPA.2: 4 residues within 4Å: Chain A: M.64, I.152, P.153, G.158 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.56, A:D.56, A:G.158

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: W.71, K.85, Q.88 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.88, A:Q.88 EDO.4: 3 residues within 4Å: Chain A: P.261, D.262 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: P.261, D.262, A.312, K.315 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.261 Water bridges: A:K.315 EDO.6: 4 residues within 4Å: Chain A: W.70, R.84, R.161, R.271 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.70, A:R.84, A:R.161, A:R.161, A:R.271, A:R.271 Water bridges: A:N.220 EDO.7: 5 residues within 4Å: Chain A: T.273, G.276, Y.277, F.280, K.339 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.273, A:T.273 EDO.8: 4 residues within 4Å: Chain A: P.319, Y.320, K.323, E.327 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.323, A:K.323 EDO.9: 4 residues within 4Å: Chain A: I.152, K.155, N.156, R.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.156, A:R.161, A:R.161 EDO.10: 5 residues within 4Å: Chain A: I.247, Q.248, Q.297, D.298, I.299 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.298 EDO.11: 5 residues within 4Å: Chain A: Q.216, R.217, K.219, K.253, R.254 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.219, A:K.219, A:K.253, A:K.253 EDO.12: 4 residues within 4Å: Chain A: G.283, H.284, D.287, R.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.287 Water bridges: A:I.279, A:R.349, A:Y.379 EDO.13: 4 residues within 4Å: Chain A: K.315, I.318, A.357, I.362 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.357 EDO.14: 4 residues within 4Å: Chain A: E.12, K.13, K.16, E.382 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.382 Water bridges: A:K.13, A:K.13 EDO.15: 3 residues within 4Å: Chain A: T.303, S.304, Q.305 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.303, A:Q.305 Water bridges: A:T.303, A:T.303

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.95 A resolution. To be published

Release Date

2010-07-28

Peptides

alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alginate lyase

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