SMTL ID : 3ngo.1

Crystal structure of the human CNOT6L nuclease domain in complex with poly(A) DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x DA- DA- DA- DA: 5'-D(*AP*AP*AP*A)-3'(Non-covalent)

DA-DA-DA-DA.1: 12 residues within 4Å: Chain A: Y.44, L.49, E.83, H.203, W.206, P.208, K.214, N.255, L.257, F.327 Ligands: MG.2, MG.3 Protein-ligand interaction information (PLIP) not available

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: N.38, D.253, N.255, I.331, H.372 Ligands: DA-DA-DA-DA.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.253 MG.3: 4 residues within 4Å: Chain A: N.38, E.83 Ligands: DA-DA-DA-DA.1, DA-DA-DA-DA.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.83, H2O.1, H2O.2, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Crystal structure of the human CNOT6L nuclease domain reveals strict poly(A) substrate specificity. Embo J. (2010)

Release Date

2010-07-28

Peptides

CCR4-NOT transcription complex subunit 6-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CCR4-NOT transcription complex subunit 6-like

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