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SMTL ID : 3nhj.1
X-ray Crystallographic Structure Activity Relationship (SAR) of Casimiroin and its Analogs Bound to Human Quinone Reductase 2
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.33 Å
Oligo State
homo-dimer
Ligands
2 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
3 residues within 4Å:
Chain A:
H.173
,
H.177
,
C.222
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:H.173
,
A:H.177
,
A:C.222
ZN.3:
3 residues within 4Å:
Chain B:
H.173
,
H.177
,
C.222
4
PLIP interactions
:
4 interactions with chain B
Metal complexes:
B:H.173
,
B:H.177
,
B:C.222
,
B:C.222
2 x
FAD
:
FLAVIN-ADENINE DINUCLEOTIDE
(Non-covalent)
FAD.2:
24 residues within 4Å:
Chain A:
H.11
,
K.15
,
S.16
,
F.17
,
N.18
,
S.20
,
P.102
,
L.103
,
Y.104
,
W.105
,
F.106
,
T.147
,
T.148
,
G.149
,
G.150
,
Y.155
,
P.192
,
E.193
,
R.200
,
K.201
Chain B:
N.66
,
G.68
,
D.117
Ligands:
A2Z.4
23
PLIP interactions
:
1 interactions with chain B
,
22 interactions with chain A
Hydrogen bonds:
B:N.66
,
A:F.17
,
A:N.18
,
A:N.18
,
A:S.20
,
A:S.20
,
A:L.103
,
A:L.103
,
A:W.105
,
A:F.106
,
A:T.147
,
A:T.147
,
A:T.147
,
A:G.149
,
A:G.150
,
A:Y.155
,
A:R.200
Hydrophobic interactions:
A:Y.104
,
A:Y.104
,
A:Y.104
,
A:Y.104
Salt bridges:
A:H.11
pi-Stacking:
A:W.105
FAD.6:
24 residues within 4Å:
Chain A:
N.66
,
G.68
,
D.117
Chain B:
H.11
,
K.15
,
S.16
,
F.17
,
N.18
,
S.20
,
P.102
,
L.103
,
Y.104
,
W.105
,
F.106
,
T.147
,
T.148
,
G.149
,
G.150
,
Y.155
,
E.193
,
E.197
,
R.200
,
V.204
Ligands:
A2Z.5
22
PLIP interactions
:
21 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:Y.104
,
B:Y.104
,
B:Y.104
Hydrogen bonds:
B:F.17
,
B:N.18
,
B:N.18
,
B:S.20
,
B:S.20
,
B:L.103
,
B:W.105
,
B:F.106
,
B:T.147
,
B:T.147
,
B:G.149
,
B:G.150
,
B:Y.155
,
B:Y.155
,
B:E.193
,
A:N.66
Salt bridges:
B:H.11
pi-Stacking:
B:F.17
,
B:W.105
2 x
A2Z
:
6,9-dimethyl[1,3]dioxolo[4,5-h]quinolin-8(9H)-one
(Non-covalent)
A2Z.4:
9 residues within 4Å:
Chain A:
W.105
,
F.106
,
G.149
,
G.150
,
N.161
Chain B:
F.126
,
G.174
,
F.178
Ligands:
FAD.2
8
PLIP interactions
:
5 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:F.126
,
B:F.178
,
B:F.178
,
B:F.178
,
B:F.178
,
A:W.105
,
A:F.106
Hydrogen bonds:
A:N.161
A2Z.5:
12 residues within 4Å:
Chain A:
F.126
,
I.128
,
G.174
,
F.178
Chain B:
W.105
,
F.106
,
G.149
,
G.150
,
M.154
,
Y.155
,
N.161
Ligands:
FAD.6
9
PLIP interactions
:
5 interactions with chain A
,
4 interactions with chain B
Hydrophobic interactions:
A:F.126
,
A:F.178
,
A:F.178
,
A:F.178
,
A:F.178
,
B:F.106
Hydrogen bonds:
B:Y.155
,
B:N.161
pi-Stacking:
B:W.105
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Sturdy, M., X-ray Crystallographic Structure Activity Relationship (SAR) of Casimiroin and its Analogs Bound to Human Quinone Reductase 2. To be Published
Release Date
2012-01-11
Peptides
Ribosyldihydronicotinamide dehydrogenase [quinone]:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Ribosyldihydronicotinamide dehydrogenase [quinone]
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