SMTL ID : 3nip.1

Crystal structure of Pseudomonas aeruginosa guanidinopropionase complexed with 1,6-diaminohexane

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

5 x 16D: HEXANE-1,6-DIAMINE(Non-covalent)

16D.1: 10 residues within 4Å: Chain B: R.51, P.246, P.250, P.255, I.257 Chain C: F.248, G.292, A.294, L.297, V.298 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:P.246, B:P.255, C:L.297 Hydrogen bonds: B:R.51, B:R.51, C:F.248, C:G.292 16D.2: 10 residues within 4Å: Chain B: F.248, G.292, A.294, L.297, V.298 Chain E: R.51, P.246, P.250, P.255, I.257 11 PLIP interactions: 5 interactions with chain B, 6 interactions with chain E Hydrophobic interactions: B:L.297, B:V.298, E:P.246, E:P.255, E:I.257 Hydrogen bonds: B:G.292, E:R.51, E:R.51 Water bridges: B:A.247, B:S.262, E:P.246 16D.3: 10 residues within 4Å: Chain D: R.51, P.246, P.250, P.255, I.257 Chain F: F.248, G.292, A.294, L.297, V.298 8 PLIP interactions: 4 interactions with chain F, 4 interactions with chain D Hydrophobic interactions: F:A.294, F:L.297, D:P.246, D:I.257 Hydrogen bonds: F:F.248, F:G.292, D:R.51, D:R.51 16D.4: 10 residues within 4Å: Chain A: R.51, P.246, P.250, P.255, I.257 Chain D: F.248, G.292, A.294, L.297, V.298 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:P.246, A:P.255, A:I.257, D:L.297, D:V.298 Hydrogen bonds: A:R.51, D:F.248 16D.5: 12 residues within 4Å: Chain C: R.189, G.190, E.212, P.255, E.256, I.257 Chain E: M.68, H.73, Q.266, R.270, L.297, T.301 11 PLIP interactions: 4 interactions with chain C, 7 interactions with chain E Hydrophobic interactions: C:R.189, E:T.301 Hydrogen bonds: C:G.190, C:I.257, E:H.73, E:Q.266, E:R.270, E:R.270, E:T.301, E:T.301 Water bridges: C:E.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S.J. et al., Crystal structures of Pseudomonas aeruginosa guanidinobutyrase and guanidinopropionase, members of the ureohydrolase superfamily. J.Struct.Biol. (2011)

Release Date

2011-06-01

Peptides

3-guanidinopropionase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

3-guanidinopropionase

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