SMTL ID : 3njg.1 (4 other biounits)

K98A mutant of SO1698 protein, an aspartic peptidase from Shewanella oneidensis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-hexamer

Ligands

6 x PRO- GLN- ILE- ILE- ASN- ARG- PRO: Peptidase(Non-covalent)

PRO-GLN-ILE-ILE-ASN-ARG-PRO.1: 22 residues within 4Å: Chain A: Y.29, Q.38, G.39, D.40, I.41, T.42, V.43, T.44, I.49, I.75, D.92, D.94, K.95, T.96, P.97, G.98, T.99, T.100, A.101, F.102, F.104, D.119 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.41, A:V.43, A:I.49, A:P.97, A:F.102, A:F.102 Hydrogen bonds: A:D.40, A:D.40, A:I.41, A:I.41, A:V.43, A:V.43, A:T.96, A:G.98, A:G.98, A:T.100, A:T.100, A:F.102, A:F.102 Water bridges: A:K.95 PRO-GLN-ILE-ILE-ASN-ARG-PRO.2: 22 residues within 4Å: Chain B: Y.29, Q.38, G.39, D.40, I.41, T.42, V.43, T.44, I.49, I.75, D.92, D.94, K.95, T.96, P.97, G.98, T.99, T.100, A.101, F.102, F.104, D.119 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:I.41, B:V.43, B:I.49, B:P.97, B:F.102, B:F.102 Hydrogen bonds: B:D.40, B:D.40, B:I.41, B:I.41, B:V.43, B:V.43, B:T.96, B:G.98, B:G.98, B:T.100, B:T.100, B:F.102, B:F.102 Water bridges: B:K.95 PRO-GLN-ILE-ILE-ASN-ARG-PRO.3: 22 residues within 4Å: Chain C: Y.29, Q.38, G.39, D.40, I.41, T.42, V.43, T.44, I.49, I.75, D.92, D.94, K.95, T.96, P.97, G.98, T.99, T.100, A.101, F.102, F.104, D.119 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:I.41, C:V.43, C:I.49, C:P.97, C:F.102, C:F.102 Hydrogen bonds: C:D.40, C:D.40, C:I.41, C:I.41, C:V.43, C:V.43, C:T.96, C:G.98, C:G.98, C:T.100, C:T.100, C:F.102, C:F.102 Water bridges: C:K.95 PRO-GLN-ILE-ILE-ASN-ARG-PRO.4: 22 residues within 4Å: Chain D: Y.29, Q.38, G.39, D.40, I.41, T.42, V.43, T.44, I.49, I.75, D.92, D.94, K.95, T.96, P.97, G.98, T.99, T.100, A.101, F.102, F.104, D.119 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:I.41, D:V.43, D:I.49, D:P.97, D:F.102, D:F.102 Hydrogen bonds: D:D.40, D:I.41, D:I.41, D:V.43, D:V.43, D:D.94, D:T.96, D:G.98, D:G.98, D:T.100, D:T.100, D:F.102, D:D.119 Water bridges: D:K.95 PRO-GLN-ILE-ILE-ASN-ARG-PRO.5: 22 residues within 4Å: Chain E: Y.29, Q.38, G.39, D.40, I.41, T.42, V.43, T.44, I.49, I.75, D.92, D.94, K.95, T.96, P.97, G.98, T.99, T.100, A.101, F.102, F.104, D.119 20 PLIP interactions: 20 interactions with chain E Hydrophobic interactions: E:I.41, E:V.43, E:I.49, E:P.97, E:F.102, E:F.102 Hydrogen bonds: E:D.40, E:I.41, E:I.41, E:V.43, E:V.43, E:D.94, E:T.96, E:G.98, E:G.98, E:T.100, E:T.100, E:F.102, E:D.119 Water bridges: E:K.95 PRO-GLN-ILE-ILE-ASN-ARG-PRO.6: 22 residues within 4Å: Chain F: Y.29, Q.38, G.39, D.40, I.41, T.42, V.43, T.44, I.49, I.75, D.92, D.94, K.95, T.96, P.97, G.98, T.99, T.100, A.101, F.102, F.104, D.119 20 PLIP interactions: 20 interactions with chain F Hydrophobic interactions: F:I.41, F:V.43, F:I.49, F:P.97, F:F.102, F:F.102 Hydrogen bonds: F:D.40, F:I.41, F:I.41, F:V.43, F:V.43, F:D.94, F:T.96, F:G.98, F:G.98, F:T.100, F:T.100, F:F.102, F:D.119 Water bridges: F:K.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Characterization of member of DUF1888 protein family, self-cleaving and self-assembling endopeptidase. J.Biol.Chem. (2012)

Release Date

2010-07-14

Peptides

Peptidase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Peptidase

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