SMTL ID : 3njl.1 (2 other biounits)

D116A mutant of SO1698 protein, an aspartic peptidase from Shewanella oneidensis, at pH7.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-hexamer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: G.74, I.75, D.77, D.94, T.96 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.74, A:D.77, A:D.94, A:T.96, H2O.5, H2O.5 MG.2: 5 residues within 4Å: Chain B: G.74, I.75, D.77, D.94, T.96 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.74, B:D.77, B:D.94, B:T.96, H2O.10, H2O.10 MG.3: 5 residues within 4Å: Chain C: G.74, I.75, D.77, D.94, T.96 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:G.74, C:D.77, C:D.94, C:T.96, H2O.15, H2O.15 MG.4: 5 residues within 4Å: Chain D: G.74, I.75, D.77, D.94, T.96 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:G.74, D:D.77, D:D.94, D:T.96, H2O.20, H2O.20 MG.5: 5 residues within 4Å: Chain E: G.74, I.75, D.77, D.94, T.96 6 PLIP interactions: 4 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:G.74, E:D.77, E:D.94, E:T.96, H2O.25, H2O.25 MG.6: 5 residues within 4Å: Chain F: G.74, I.75, D.77, D.94, T.96 6 PLIP interactions: 4 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:G.74, F:D.77, F:D.94, F:T.96, H2O.30, H2O.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Characterization of member of DUF1888 protein family, self-cleaving and self-assembling endopeptidase. J.Biol.Chem. (2012)

Release Date

2010-07-21

Peptides

Peptidase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Peptidase

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