SMTL ID : 3njx.1

Rhamnogalacturonan Lyase from Aspergillus aculeatus mutant H210A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.347, D.349, Q.351, D.502 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.347, A:D.349, A:Q.351, A:D.502, A:D.502, H2O.13

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: N.19, S.229, R.230, S.231, G.232 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.19, A:S.229, A:R.230, A:S.231, A:G.232 Water bridges: A:N.19, A:S.229, A:S.229 SO4.3: 3 residues within 4Å: Chain A: K.395, S.489, S.490 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.490 Water bridges: A:S.396, A:G.491, A:G.491 Salt bridges: A:K.395 SO4.4: 4 residues within 4Å: Chain A: R.429, A.444, S.487, G.488 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.487, A:G.488 Water bridges: A:R.429, A:S.489, A:S.489 Salt bridges: A:R.429 SO4.5: 5 residues within 4Å: Chain A: Q.47, S.53, R.107, R.111, Y.199 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.53, A:S.53, A:Y.199 Water bridges: A:R.107, A:R.107, A:R.111, A:Y.199 Salt bridges: A:R.107, A:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen, M.H. et al., Structural and Biochemical Studies Elucidate the Mechanism of Rhamnogalacturonan Lyase from Aspergillus aculeatus. J.Mol.Biol. (2010)

Release Date

2010-10-06

Peptides

Rhamnogalacturonase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rhamnogalacturonase B