SMTL ID : 3nkh.1

Crystal Structure of Integrase from MRSA strain Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: R.125 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: F.53, N.156, M.162, Q.163, R.166 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: F.53, N.156, Q.163, R.166 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain B: R.125 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: Q.64, M.69, R.70, I.71, S.186, H.187, R.190 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.64, A:I.71, A:S.186 Water bridges: A:G.72 Salt bridges: A:H.187 SO4.5: 6 residues within 4Å: Chain A: Q.199, M.230 Chain B: Q.199, Q.200, G.201, M.230 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.200 SO4.10: 5 residues within 4Å: Chain B: G.48, R.52, D.140, N.144, H.157 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.144 SO4.12: 2 residues within 4Å: Chain B: W.97, F.105 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.97 Water bridges: B:H.99

3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.4: 6 residues within 4Å: Chain A: Q.240, V.241, K.242, L.243 Chain B: L.28, E.32 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.28 Hydrogen bonds: B:E.32, A:Q.240, A:K.242 MRD.6: 6 residues within 4Å: Chain A: L.28, N.29, E.32 Chain B: Q.240, V.241, K.242 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.28 Hydrogen bonds: A:E.32, B:K.242 MRD.11: 5 residues within 4Å: Chain B: Y.25, E.27, Q.199, Q.229, M.230 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Q.199 Hydrogen bonds: B:Y.25

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.7: 2 residues within 4Å: Chain A: L.28, Q.200 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.28, A:Q.200 Hydrogen bonds: A:Q.199, A:Q.200 MPD.8: 3 residues within 4Å: Chain A: V.241 Chain B: L.196, Q.200 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.241 Hydrogen bonds: B:Q.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Integrase from MRSA strain Staphylococcus aureus. To be Published (2010)

Release Date

2010-08-18

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrase