SMTL ID : 3nl0.1

Mutant P44S M296I of Foot-and-mouth disease Virus RNA-dependent RNA polymerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x U- G- G- G- C- C- C: 5'-R(P*UP*GP*GP*GP*CP*CP*C)-3'(Non-covalent)

U-G-G-G-C-C-C.1: 32 residues within 4Å: Chain A: G.107, L.108, D.109, T.115, A.116, R.128, K.164, V.181, I.189, R.193, H.204, V.215, G.216, C.217, N.218, S.298, G.299, C.300, S.301, A.302, T.303, S.304, I.305, Y.336, R.461 Ligands: G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, MG.4 Protein-ligand interaction information (PLIP) not available

1 x G- G- G- C- C- C: 5'-R(*G*GP*GP*CP*CP*C)-3'(Non-covalent)

G-G-G-C-C-C.2: 24 residues within 4Å: Chain A: K.164, S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, M.403, I.411, R.416, T.419, E.422, K.423, S.426, V.427, L.430 Ligands: U-G-G-G-C-C-C.1, U-G-G-G-C-C-C.1, U-G-G-G-C-C-C.1, U-G-G-G-C-C-C.1, U-G-G-G-C-C-C.1, U-G-G-G-C-C-C.1 Protein-ligand interaction information (PLIP) not available

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.238, D.240, D.339, T.384 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.238 MG.4: 5 residues within 4Å: Chain A: M.111, E.112, R.128 Ligands: U-G-G-G-C-C-C.1, U-G-G-G-C-C-C.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agudo, R. et al., A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape. Plos Pathog. (2010)

Release Date

2011-07-13

Peptides

3D polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3D polymerase